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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST054639
species:
Saccharum officinarum
source:
PMRD, original name:
sof-miR171a
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAATTGAGCCGCGCCAATATC
miRNA*
GCAGCGGCGTCCCGG
mismatches:
16
bulges:
0
View larger
pre-miRNA
AACACACAATGCGGTTCCCTTAAATTGTCCCCCGGGGAAAGCGTTGCGCAAGTTCTTGAATAAACGACGCCCATTGGTGGCCCATCCCAATGTGAAGTCG
AGCACGGGATTCCGGCTGGCGCCCGAAGTTGGTCCAGCACCGCTTGCACGCAGGTGAGGTGCGCGAACTGGAGCACGGGGGAGACCTCGTAGAAGGCCTT
GTACGCCCCGAGCTTGAGGACCACGTCGTATGGCGTGGAAACCGGGGGCGCCAGGGCCTCGCCGGTTGGGGAGAGCGCAACGCGCAAGGCCTCCTTGAAG
TAGAAGGCTGAGCGGA
GCAGCGGCGTCCCGG
CCGTGGGAGCGGCGGGGAACCAA
TAATTGAGCCGCGCCAATATC
dot-bracket secondary structure
.............((((((((......((((...))))..(((((((((...(((((.(((...(((.((((..(((((.(((..............(((
(((.((((..(((((.(.((((((...((((...))))..((((((....)))))).)).)))).).)))))..((((((....))))))..........
......)))).))))))...(((((((....)))))))......))).))))))))).)))...))).))))).)))))))))....(((((.((.....
.)).)))))))).)))
)).(((((.((((.(
((((....))))).)))).....
.......))))).........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|O81316|SCL6_ARATH: 0.0000000000004
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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